1. Final Flight of the Osiris The crew of the Osiris discover an army preparing to invade Zion. While one crew member races inside the Matrix to get the message to Zion, the others try desperately to buy her enough time while fighting off an onslaught of Sentinels they can't possibly defeat. 2-3. The Second Renaissance Part 1 and 2 Humans have created the ultimate AI, which is just as smart as they are. But complications arise when these robots and the humans try to exist peacefully, and eventually all-out war breaks out. The humans ultimately lose the war, and become trapped in the Matrix as seen in the live-action films. 4. Kid's Story A young man discovers that his world isn't real, that it's a computer-generated fantasy land created by robots using humans for energy. He escapes with the help of the hacker Neo. Based on the Matrix trilogy. 5. Program Cis and Duo engage in battle in a virtual recreation of Feudal Japan. 6. World Record While running the fastest race in his life, a champion track star breaks free of his computer-generated world for a small period of time. When he goes back to the real world, he has no memories and is placed in a nursing home. Based on the Matrix trilogy. 7. Beyond While looking for her lost pet, a young woman meets up with some kids in Tokyo to play in a "haunted house," which is really a glitch in their computer world. Based on the Matrix trilogy. 8. Detective Story A detective named Ash is called upon by a mysterious organization to hunt down the notorious hacker Trinity. 9. Matriculated A group of scientists capture a robot and place it in a surreal fantasy world. When the robot's friends come in and kill most of the scientists; however, the robot and the last scientist remaining face isolation in the computer-generated world. Based on the Matrix trilogy.

In front of a camera, roommates Mao Tsuchiya and Hisashi Ootomo make three promises: Mao must not tell anyone Hisashi is gay and in a relationship with another man; Hisashi must never fall in love or make any advances on Mao; and one must not disturb the other's "personal time." Thus begins their second year of cohabitation. However, everything starts to crumble when the film club—of which Mao is a member—wants to cast Hisashi in the lead role for their upcoming movie. The problem arises with the movie's plot, as it is about boys' love—a romance between a delinquent and the class president. Mao is adamant to dissuade Hisashi from becoming the protagonist due to their first promise; but, to his surprise, Hisashi is easily convinced by the director. After imagining Hisashi as the delinquent he is playing, Mao becomes overly conscious of his presence. He knows Hisashi is just a friend and out of his reach, but Mao cannot keep lying to himself anymore—his feelings toward his roommate may no longer be purely platonic.

Smart, refined, and strikingly gorgeous, half-Russian half-Japanese Alisa Mikhailovna Kujou is considered the idol of her school. With her long silver hair, mesmerizing blue eyes, and exceptionally fair skin, she has captured the hearts of countless male students while being highly admired by all others. Even so, due to her seemingly unapproachable persona, everyone remains wary around the near-flawless girl. One of the few exceptions is Alisa's benchmate Masachika Kuze, a relatively average boy who spends his days watching anime and playing gacha games. Despite his nonchalant demeanor, Masachika is the sole student to receive Alisa's attention. Unable to be fully honest, Alisa is frequently harsh on Masachika and only expresses her affection in Russian. Unbeknownst to her, however, Masachika actually understands the language yet simply pretends otherwise for his own amusement. As the odd pair continues to exchange witty and playful remarks, their relationship gradually grows more romantic and delightful—and Alisa might finally learn to freely convey her true feelings.

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